RNA processing toolsThe tools within this category work on RNA data and provide i.a. shape prediction and hybridization solutions

Shapes Studio - The RNA shapes studio comprises four RNA secondary structure prediction tools, which make heavy use of shape abstraction.

aCMs - Ambivalent Covariance Models are stochastic homology search tools that support more than one consensus secondary RNA structures.

GUUGle - A utility for fast exact matching under RNA base pairing rules

InSilicoDicer - InSilicoDicer - Intrinsic and Extrinsic Prediction of mature miRNA.

Locomotif - Locomotif: Localization of RNA motifs with generated thermodynamic Matchers

paRNAss - paRNAss - Prediction of Alternate RNA Secondary Structures.

planACstar - planACstar is an implementation of plan AC* that improves structural RNA alignments by structure comparison .

RNAforester - RNAforester is a tool for RNA secondary structure comparison.

RNAhybrid - finding minimum free energy hybridization

RNA Movies - RNA Movies is a system for the visualization of RNA secondary structure landscapes. Its input is a script consisting of structures from which animated graphical structure representations are generated. In this way, it creates the impression of an RNA-molecule moving through its own 2D structure space.

RNAsifter no description available